jarose2006fx4

Recently Ive been having some issues with my 2006 5.4. It has been idling really rough after getting up to temp. Ive tried cleaning my mass air and the throttle body and still hasn't helped. Does anyone have any other suggestions? This is my daily driver so any idea would be helpful.
History of the truck
Edge programmer, throttle body spacer, K&N filter with cold air intake, 133K new plugs and coils