No, you should be fine with what you did. All intakes for the Ecoboost basically work the same regardless of which brand you got long as it's not a cheap ass knock off ebay one. And the AFE is a quality kit.
Quick question. I took my SCT LiveWire TS out for a tank of gas to prove the wife wrong on MPG. I hooked it up to the computer while it was off and updated it. All that aside retuning the same, but for stock intake i put Arid i have the AFE stage2 with the 2 filters. Will that matter? it might lean or right the vehicle i believe but i'm not knowledgeable enough to know.
Thanks you look like an expert on the SCT livewire TS