I ran across a youtube video related to my miss. I am waiting for the part and should have it in a few hours. According to this video there is a service bulletin about my issue. He says the throttle body mounting gasket was the culprit. I went and pulled the gasket (took all of 5 minutes) and saw exactly what he was saying i would find. The replacement gasket is a Fel-pro #60846 and costs $1.49 and O'Reilie's will have it around 14:30 today. Here is a link to the video if any are interested.
I will post again after I see what happens. I'm going to be mildly pissed if it fixes it for $1.49 when I spent $450.00 chasing the problem.
A list of what I replaced;
Coolant Temp sensor
Valve cover gasket
Throttle positioning sensor
Injector (one was melted)
Distributor and rotor
Assorted broken, burnt, and dry rotted vacuum hoses/lines
Assorted Cool tape and heat shield so I don't re-melt hoses